Most of the custom code developed by us is available on: https://gitlab.com/dvorselen
Anyone finding use in the code should feel free to use & adapt it. Please do cite the relevant works when you do (see the included readme files).
Matlab code for superresolution 3D shape analysis of homogeneously labeled microspheres can be found on: https://gitlab.com/dvorselen/DAAMparticle_Shape_Analysis.
The python code for traction force analysis based on deformed 3D microparticle shapes (developed by Dr. Yifan Wang & Prof. Wei Cai) can be found on: https://gitlab.com/micronano_public/ShElastic
Find the original paper describing both parts of the approach here.